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Journal Publications |
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| Journal | Title and Authors | Remarks | |
| OMICS: A Journal of Integrative Biology, 2007,11:161-185 DOI: 10.1089/omi.2007.0013 |
A Light Regulated Network in Cyanobacteria , Aurora, R.,Hihara, Y., Singh, A.K. and Pakrasi, H.B. | Supplementary Information | |
| Current Opinion in Plant Biology 2007,10:182-189 |
Physcomitrella patens: mosses enter the genomic age , Quatrano R.S., McDaniel, S.F., Khandelwal, A., et al. | ||
| Developmental Dynamics 236(8):2181-97, 2007 | Systems Level Analysis of Osteoclastogenesis Reveals Intrinsic and Extrinsic Regulatory Interactions, Kiesel, J., Miller, C., Abu-Amer, Y. and Aurora, R. |
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| Proceedings of the National Academy of Science USA. 104:13337-13342 | Moonlighting activity of presenilin in plants is independent of γ-secretase and evolutionarily conserved , Khandelwal, A., Chandu, D., Roe, M.D., Kopan, R. and Quatrano, R.S. | ||
| Science, 4 January 2008 : Vol. 319. no. 5859, pp. 64 - 69 | The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants , Rensing S.A. et al. | Supplementary Information, Supplementary Table | |
| Identification of an atypical membrane protein involved in the formation of protein disulfide bonds in oxygenic photosynthetic organisms, Singh, A.K., Bhattacharyya-Pakrasi, M. and Pakrasi H.B. | Supplementary Information | ||
Plant Physiology, In Press |
Integration of carbon and nitrogen metabolism with energy production is crucial to light acclimation in the cyanobacterium Synechocystis , Singh A.K., Elvitigala T.R., Bhattacharya-Pakrasi, M., Aurora, R., Ghosh, B.K. and Pakrasi, H.B. | Supplementary Information figures,table2 | |
| Submitted | Properties of Mutants of Synechocystis sp. PCC 6803 Lacking Carbon Sequestration Systems, Xu, M., Bernat, G., Singh, A.K., Mi, H., Rogner, M., Pakrasi, H.B., Ogawa, T. | ||
| Submitted | Arabidopsis transcriptome reveals control circuits regulating redox homeostasis and the role of an AP2 transcription factor , Khandelwal, A., Elvitigala, T.R., Ghosh, B.K. and Quatrano, R.S. | Supplementary Information | |
| Submitted | Effect on Diurnal Rhythms by changes in Light Input , Elvitigala, T.R., Pakrasi, H.B. and Ghosh, B.K. | Supplementary Information | |
| Submitted | Identification of Genes with Diurnal Oscillations from Microarray Time Series Data, Wang, W. Ghosh, B.K. and Pakrasi, H.B. | ||
| In Preparation | A system approach to understand the integrated cellular responses associated with PSII and PSI light in Synechocystis sp. PCC 6803 Singh A.K., Kunnavakkam R., Bhattacharya-Pakrasi, M., Aurora, R., and Pakrasi, H.B. | ||
| In Preparation | Techniques used in Microarray Data analysis, Elvitigala T.R. and Ghosh B.K. | ||
| In Preparation | Physcomitrella patens transcriptome under high light , Khandelwal, A., Elvitigala T.R., Ghosh, B.K. and Quatrano, R.S. | ||
| In Preparation | Conservation of high light responses in a photosynthetic prokaryote, Synechocystis 6803, and a photosynthetic eukaryote Arabidopsis thaliana ,Khandelwal, A., Elvitigala, T.R., Singh, A.K., Bhattacharya-Pakrasi, M., Ghosh, B.K., Quatrano, R.S., and Pakrasi, H.B. | ||
| In Preparation | Genome-wide Comparison of Gene Expression in H2O2 Treated Kap108Δ Yeast Mutants, Tkachev, D., Aurora, R. and Belanger, K. |
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| In Preparation | Regulation of Metabolic Network Maintains Redox Homeostasis in Synechocystis 6803 Molecular Systems Biology, Kunnavakkam, R., Singh A. K., Bhattacharya-Pakrasi, M., Pakrasi H. B. and Aurora, R. | ||
| In Preparation | A systems level analysis of Synechocystis 6803 shows that intensity and quality of light changes elicit nutrient starvation responses, Singh, A. K., Kunnavakkan, R., Pakrasi, H. B. and Aurora, R. | ||
| In Preparation | Network analysis of the transcriptional status of cyanobacterial cells with altered redox poise of the cellular plastoquinone pool, Bhattacharyya-Pakrasi, M., Kunnavakkan, R., Singh, A. K., Elvitigala, T.R., Ghosh, B., Aurora, R and Pakrasi H. B. | ||
| In Preparation | Systematic Identification of Cellular Processes essential for Growth and Development of the Cyanobacterium Synechocystis during preferential Illumination, Singh, A.K., Bhattacharya-Pakrasi, M., Aurora, R. and Pakrasi, H.B. | ||
| In Preparation | Genome-wide analysis of glutathione-regulated gene expression profiles in Synechocystis, Cameron, J.C. and Pakrasi, H.B. | ||
| In Preparation | A Lumenal Peroxiredoxin-Q Protects Photosystem-II In Synechocystis 6803, Bhattacharyya-Pakrasi, M., Nedbal, L., Welsh, E., Si, X., Pakrasi, H.B. | ||
| In Preparation | Meta-transcriptome analyses reveal the organismal adaptations to environmental perturbations in photosynthetic organism, Singh A.K., Elvitigala T.R., Cameron, J.C., Bhattacharya-Pakrasi, M., Ghosh, B.K., Pakrasi, H.B | ||
Conference Papers and Book Chapters |
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| Conference/Book | Title and Authors | ||
| 2nd CoE Workshop on Human Adaptive Mechatronics, Center of Excellence Project, Tokyo Denki University, Saitama, 2005 | Light Induced Gene Expression Dynamics in Cyanobacteria, Ghosh B.K., Du X. and Polpitiya, A.D. | ||
| Emerging Model Organism Project: Moss (P. patens) | The Moss, Physcomitrella patens (abstract), Cove, D. J., Perroud, P., Charron, A.J., McDaniel, S.F., Khandelwal, A. and Quatrano, R.S. | ||
Poster Presentations |
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| Event | Title and Authors | ||
| 7th Annual Fall symposium, Merging and Emerging Disciplines in Biology, Sep30- Oct1, 2005 | Redox Regulation of Arabidopsis Transcriptome, Abha Khandelwal et al. | ||
| International Conference for Systems Biology, 2005, Boston, USA | A Network of Genes Regulated by Light in Cyanobacteria, Rajeev Aurora et al. | ||
| Experimental Biology, April 2006 | The effect of experimental design on network inference, Rajeev Aurora et al. | ||
| International Conference for Systems Biology, 2006, Yokahama, Japan | Genes and functions that regulate redox status in a photosynthetic organism, Rajeev Aurora et al. | ||
| NSF, June 2006 | A Systems Approach to Study Redox Regulation of Functions of Photosynthetic Organisms, Pakrasi H , et al. | ||
| 32nd Annual Midwest Photosynthesis Meeting, Oct 29th – 31st 2006 | Identification of novel genes required for the maintenance of redox homeostasis in the oxygenic photosynthetic organisms ( poster ), Abhay Singh et al. | ||
| Biology Research Symposium, Colgate University, NY | Genome-wide Comparison of Gene Expression in H2O2 Treated kap108Δ Yeast Mutants, Dima Tkachev | ||
| Summer Undergraduate Research Symposium, Colgate University, NY | A Double NLS mutation in the S. cerevisiae Protein Nma111 Prevents Nuclear Localization, Travis OBrien | ||
| Undergraduate Research Poster Session, April 2007, Colgate University, NY | Genome-wide Comparison of Gene Expression in H2O2 Treated kap108Δ Yeast Mutants, Dima Tkachev | ||
| 9th Cyanobacterial Workshop,June 6-10,2007,Wisconsin,USA | Recovery from photoinhibition requires a lumen localized peroxiredoxin-Q in Synechocystis 6803, Maitrayee Bhattacharyya-Pakrasi et al. | ||
| 9th Cyanobacterial Workshop,June 6-10,2007,Wisconsin,USA | A novel membrane-bound VKORC1/Dsb-like fusion protein involved in disulfide bond formation in oxygenic photosynthetic organisms ( poster ), Abhay Singh et al. | ||
| 9th Cyanobacterial Workshop,June 6-10,2007,Wisconsin,USA | The reduction-oxidation buffering system in Synechocystis sp. PCC 6803, Jeffrey Cameron et al. | ||
| 9th Cyanobacterial Workshop,June 6-10,2007,Wisconsin,USA | Response to redox stresses in Synechocystis 6803: information revealed from microarray experiments ( poster ), Thanura Elvitigala et al. | ||
| Plant biology and Botany Joint congress 2007, July7-11, Chicago, USA | Redox homeostasis in plants: The Arabidopsis transcriptome in response to photosynthetic stress using high light and DCMU, ( poster ), Abha Khandelwal et al. | ||
| 8th International Conference on Systems Biology-2007, October 1-6, Long Beach, California, USA | Identification and Modeling of Co-Rhythmic Genes from Micro-array Time Series Data, ( poster ), Wenxue Wang et al. | ||
| 8th International Conference on Systems Biology-2007, October 1-6, Long Beach, California, USA | Computational Analysis of the Redox stress response in organisms, ( poster ), Thanura Elvitigala et al. | ||
| 8th International Conference on Systems Biology-2007, October 1-6, Long Beach, California, USA | Systems approach divulges redox regulation of Arabidopsis transcriptome, ( poster ), Abha Khandelwal et al. | ||
Other Presentations |
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| Event | Title and Speaker | ||
| Seminar Series, California state University, Long Beach, Oct 4, 2007 | Systems Analysis of Redox Regulated Arabidopsis Transcriptome, Abha Khandelwal | ||
| Danforth Plant Science Center (DDPSC), April 1, 2008 | Glutathione metabolism and redox homeostasis in the cyanobacterium Synechocystis sp. PCC 6803, Jeff Cameron | ||
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Tuesday, 03-Jun-2008 3:14 PM
